Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
UVM | rs62019934 | chr15:40969640 | G/A | 1.64E-5 | 66 | 27.87 | 26.12 | 17.07 | KM Plot |
UVM | rs6438946 | chr3:125649817 | C/T | 0.000104 | 65 | 25.32 | 33.23 | 7.6 | KM Plot |
UVM | rs6488065 | chr12:9788572 | A/G | 0.000108 | 67 | 27.62 | 23.4 | 7.6 | KM Plot |
UVM | rs6598202 | chr12:132617807 | C/T | 3.4E-7 | 67 | 31.83 | 23.25 | 0.73 | KM Plot |
UVM | rs6713233 | chr2:201819627 | G/A | 2.98E-7 | 67 | 24.77 | 27.9 | 1.27 | KM Plot |
UVM | rs67432048 | chr2:239022417 | A/G | 4.67E-5 | 67 | 27.37 | 24.6 | 1.18 | KM Plot |
UVM | rs6754564 | chr2:201779932 | C/T | 2.98E-7 | 67 | 24.77 | 27.9 | 1.27 | KM Plot |
UVM | rs71184928 | chr22:24260216 | CTTTTTTTTT/C | 0.000137 | 66 | 7.6 | 34.88 | 24.77 | KM Plot |
UVM | rs7132037 | chr12:9809353 | C/T | 0.000125 | 67 | 27.88 | 21.8 | 7.6 | KM Plot |
UVM | rs7133187 | chr12:132595647 | T/G | 3.82E-7 | 66 | 31.83 | 23.63 | 0.73 | KM Plot |
UVM | rs7134173 | chr12:132586159 | C/G | 4.5E-7 | 66 | 31.55 | 23.25 | 0.73 | KM Plot |
UVM | rs7136649 | chr12:132598995 | C/T | 3.82E-7 | 66 | 31.83 | 23.63 | 0.73 | KM Plot |
UVM | rs7136821 | chr12:9773507 | C/T | 0.00014 | 66 | 27.37 | 21.8 | 7.6 | KM Plot |
UVM | rs7138351 | chr12:132614254 | T/C | 4.6E-7 | 65 | 31.83 | 23.25 | 0.73 | KM Plot |
UVM | rs71457488 | chr12:9811329 | C/CA | 0.000125 | 67 | 27.88 | 21.8 | 7.6 | KM Plot |